Are you using the new dynamic sediment model? I'd be cautious about using this unless you have really good sediment data and are prepared to do a rigorous dive into all the function outputs.
The depth of the sediment will be governed by the total amount of all the particulate sediment initializations, ie PIP, PIN, PON, POP, POC, SSOL, metal particulates etc.
The dissolved amounts will then be dependent on this total depth and the sediment porosity.